Report for Sequence Feature Glyma11g02980
Feature Type: gene_model
Chromosome: Gm11
Start: 1965625
stop: 1967955
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g02980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G22920 AT
Annotation by Michelle Graham. TAIR10: non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268
SoyBase E_val: 5.00E-119 ISS
GO:0015996 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_Q5EMP7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Senescence-inducible chloroplast stay-green protein 1 n=1 Tax=Glycine max RepID=Q5EMP7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q5EMP7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Senescence-inducible chloroplast stay-green protein 1 n=1 Tax=Glycine max RepID=Q5EMP7_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma11g02980
Locus Gene Symbol Protein Name
D2 D2 D2
D2 SGR1 Stay-green gene 1
Expression Patterns of Glyma11g02980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g02980
Paralog Evidence Comments
Glyma01g42390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g02980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g027400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g02980
Coding sequences of Glyma11g02980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g02980.1 sequence type=CDS gene model=Glyma11g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTACTCTCACAACTGTTCCTGTGCTCCCTTCTAAGCTTAACAAGCCTTCGCTTTCTCCGCACCACAATTCTCTTTTTCCCTACTGTGGAAGACGGGTCGGGAAGAAGAACAAAGCAATGGTTCCTGTTGCAAGGTTGTTCGGGCCAGCCATATTTGAAGCCTCAAAACTGAAGGTTTTGTTCTTAGGAGTGGACGAAAATAAACACCCAGGAAATCTCCCAAGGACTTATACGCTAACCCATAGTGATATAACCGCTAAGCTCACCTTGGCAATCTCTCAAACCATAAATAATTCTCAGCTGCAGGGGTGGTACAACAGATTTCAAAGGGACGAAGTGGTGGCACAGTGGAAAAAGGTGAAGGGAAGGATGTCTCTGCACGTTCACTGCCACATTAGTGGAGGTCATTTTCTCTTGGATATATTAGCAAGGTTAAGATACTTCATCTTCTGCAAGGAGCTACCAGTGGTGTTGAAGGCCGTCGTTCACGGCGATGAAAACCTATTCAACAGCTACCCAGAATTGCAAGATGCCTTGGTTTGGGTCTACTTTCACTCAAACATTCCAGAATTCAACAAGGTGGAATGTTGGGGCCCACTGAAGGAAGCGTCAGCACCCACAGGTGGGGTCCAGGAGGAGGGGTTGGCAATTCCACAGCCATGCCAAGAAGAATGCCAATGTTGCTTTCCACCGCTTACGTTGAGCCCTATTCAGTGGTCTAAACAAGTTCCCAGCCGCCATTACGAACCTTGTGATGGGATTGGGACCCAACAAAATCTATAA
Predicted protein sequences of Glyma11g02980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g02980.1 sequence type=predicted peptide gene model=Glyma11g02980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCTLTTVPVLPSKLNKPSLSPHHNSLFPYCGRRVGKKNKAMVPVARLFGPAIFEASKLKVLFLGVDENKHPGNLPRTYTLTHSDITAKLTLAISQTINNSQLQGWYNRFQRDEVVAQWKKVKGRMSLHVHCHISGGHFLLDILARLRYFIFCKELPVVLKAVVHGDENLFNSYPELQDALVWVYFHSNIPEFNKVECWGPLKEASAPTGGVQEEGLAIPQPCQEECQCCFPPLTLSPIQWSKQVPSRHYEPCDGIGTQQNL*